Biophysics.

A44) Electronic structure and carrier transfer in B-DNA monomer polymers and dimer polymers: Stationary and time-dependent aspects of wire model vs. extended ladder model

         K. Lambropoulos, M. Chatzieleftheriou, A. Morphis, K. Kaklamanis, R. Lopp, M. Theodorakou, M. Tassi, and C. Simserides*

         Physical Review E 94 (2016) 062403 (22 pages)

         URL: http://link.aps.org/doi/10.1103/PhysRevE.94.062403

         doi: 10.1103/PhysRevE.94.062403

         Related version at arXiv arXiv:1609.00235v1



A43) Wire and extended ladder model predict THz oscillations in DNA monomers, dimers and trimers

         K. Lambropoulos, K. Kaklamanis, A. Morphis, M. Tassi, R. Lopp, G. Georgiadis, M. Theodorakou, M. Chatzieleftheriou, and C. Simserides*

         Journal of Physics: Condensed Matter 28 (2016) 495101 (19 pages)

         http://iopscience.iop.org/article/10.1088/0953-8984/28/49/495101/meta

         doi: 10.1088/0953-8984/28/49/495101

         Related version at arXiv arXiv:1609.00180v1



A42) Lowest ionization and excitation energies of biologically important heterocyclic planar molecules

         M. Mantela, A. Morphis, M. Tassi, and C. Simserides*

         Molecular Physics 114 (2016) 709-718

         doi: 10.1080/00268976.2015.1113313


A41) Unbiased charge oscillations in DNA monomer polymers and dimer polymers

         K. Lambropoulos, M. Chatzieleftheriou, A. Morphis, K. Kaklamanis, M. Theodorakou, and C. Simserides*

         Physical Review E 92 (2015) 032725 (16 pages)

         doi: 10.1103/PhysRevE.92.032725

         Related older version also at arXiv:1504.02638


We also published Publisher’s Note: Unbiased charge oscillations in B-DNA: Monomer polymers and dimer polymers [Phys. Rev. E 92, 032725 (2015)]

         K. Lambropoulos, M. Chatzieleftheriou, A. Morphis, K. Kaklamanis, M. Theodorakou, and C. Simserides*

         Physical Review E 93, 069902(E) (2016)

         doi: 10.1103/PhysRevE.93.069902



A40) THz and above THz electron or hole oscillations in DNA dimers and trimers

         K. Lambropoulos, K. Kaklamanis, G. Georgiadis, and C. Simserides*

         Annalen der Physik (Berlin) 526 (2014) 249–258

         doi: 10.1002/andp.20140006A7


A39) A systematic study of electron or hole transfer along DNA dimers, trimers and polymers

         C. Simserides*

         Chemical Physics 440 (2014) 31-41

         doi: 10.1016/j.chemphys.2014.05.024


Related work at arXiv

          arXiv:1402.0654 A systematic study of electron or hole transfer along DNA dimers, trimers and polymers

          arXiv:1312.6842 Charge transfer along DNA dimers, trimers and polymers


A37)Density of states and extent of wave function: two crucial factors for small polaron hopping conductivity in 1D”

         M. Dimakogianni, C. Simserides*, G. P. Triberis

         Philosophical Magazine, 93 (2013) 2729-2748

         doi: 10.1080/14786435.2013.785639

         Also at arXiv:1209.1582v1 [cond-mat.dis-nn]


A32)Electronic parameters for charge transfer along DNA

         L. G. D. Hawke, G. Kalosakas, C. Simserides

         Eur. Phys. J. E 032, 291–305 (2010)     doi: 10.1140/epje/i2010-10650-y

         Also at arXiv:0908.1248v1  [physics.bio-ph]

         We have also published “Erratum to: Electronic parameters for charge transfer along DNA”

         L. G. D. Hawke, G. Kalosakas, and C. Simserides

         Eur. Phys. J. E 34 (2011) 118

         doi: 10.1140/epje/i2011-11118-4


A28)Empirical LCAO parameters for p molecular orbitals in planar organic molecules”

         L. G. D. Hawke, G. Kalosakas, C. Simserides

         Molecular Physics 107 (2009) 1755–1771     doi: 10.1080/00268970903049089

         Also at arXiv:0808.3984v2 [physics.chem-ph]

 

A27)The π-π* molecular structure of flavin of FADH- enzymatic cofactor using the LCAO method

         L. G. D. Hawke, C. Simserides*, G. Kalosakas

         Materials Science and Engineering B 165 (2009) 266–269     doi: 10.1016/j.mseb.2009.02.012

         Οn the occasion of NN08


A24)Effects of the task of categorizing FM direction on auditory evoked magnetic fields in the human auditory cortex”

         R. Koenig, C. Sielużycki, C. Simserides, P. Heil, H. Scheich

         Brain Research 1220 (2008) 102-117     doi: 10.1016/j.brainres.2008.02.086


A17)A small polaron hopping model for multiphonon-assisted transport along DNA molecules,

         in the presence of disorder”

         G. Triberis, C. Simserides* and V. Karavolas

         Physica E: Low-dimensional Systems and Nanostructures 32 (2006) 592–595                 

         doi: 10.1016/j.physe.2005.12.111

         Proceedings of MSS12 (12th International Conference on Modulated Semiconductor Structures)


A16)Small polaron hopping transport along DNA molecules”

         G. P. Triberis, C. Simserides and V. C. Karavolas

         J. Phys.: Condens. Matter 17 (2005) 2681-2690     doi: 10.1088/0953-8984/17/17/016



C20)THz oscillations in DNA monomers, dimers and trimers”

         K. Lambropoulos, K. Kaklamanis, G. Georgiadis, M. Theodorakou, M. Chatzieleftheriou, M. Tassi, A. Morphis and C. Simserides*

         PIERS (Progress in Electromagnetics Research Symposium) Proceedings, 6-9 July 2015, Prague, pp 879-833

         Best Student Paper Award (Optics and Photonics)



C13)The effect of a categorical discrimination task on the auditory M100 peak latency”

         R. König, C. Sielużycki, C. Simserides, H. Scheich, 

         International Congress Series 1300 (2007) 45-48     doi: 10.1016/j.ics.2007.01.062 

         Proceedings of BIOMAG 2006 (15th International Conference on Biomagnetism)


C12)       “High temperature electrical conductivity due to small polaron hopping motion in DNA molecules”

         G. P. Triberis, V. C. Karavolas and C. D. Simserides

         Journal of Physics: Conference Series 10 (2005) 210–213 (with referee)

         doi: 10.1088/1742-6596/10/1/052

         Proceedings of the 2nd Conf. on Microelectronics, Microsystems and Nanotechnology 2004


C9)   “Do stimuli or tasks determine lateralized auditory cortex responses? An MEG study“

         C. Sielużycki, R. König, C. Simserides, H. Scheich

         International Journal of Bioelectromagnetism, IJBEM 7 (2005) 185-188

[Proceedings of the Joint Meeting of 5th International Conference on Bioelectromagnetism and 5th International Symposium on Noninvasive Functional Source Imaging within the Human Brain and Heart (BEM & NFSI), University of Minnesota, Twin Cities campus in Minneapolis, Minnesota, USA, 12-15/5/2005].


C6)   “An MEG study of directional categorization of frequency-modulated tones”

         C. Simserides, R. König, and H. Scheich

         Proceedings of the 14th International Conference on Biomagnetism (BIOMAG 2004),

         E. Halgren, S. Ahlfors, M. Hämäläinen, and D. Cohen (eds.), pp. 543-544. Boston: Biomag 2004 Ltd.


C5)   “Task-dependent activation of the auditory cortex by frequency-modulated tones: an MEG study”

         C. Simserides*, R. König, and H. Scheich

         Biomedizinische Technik 48 (2004) 205-207 (with referee)

         Proceedings of NFSI-2003 (4th International Symposium on Nonivasive Functional Source Imaging)


C4)Auditory Cortex Response to Frequency-Modulated Tones Investigated with MEG”

         R. König, C. Simserides, and H. Scheich

Proceedings of the International Conference on Auditory Cortex, Shaker Verlag, Aachen, Germany (2003) p.30 (13-17 September 2003, Magdeburg, Germany)


D8)  L. G. D. Hawke, G. Kalosakas, C. Simserides, Tight-binding parameters for charge transport in DNA”, 5th Conference of the Hellenic Society for Computational Biology and Bioinformatics, 17-19 October 2010, Alexandroupolis, Greece




A few related presentations


EMN Open Access Week (2014) Chengdu

Systematic study of carrier transfer in DNA polymers


NN14 (2014) Thessaloniki

THz and above THz electron or hole oscillations in DNA dimers and trimers


MIFP March Meeting (2011) Rome

Tight binding parameters for charge transport along DNA


MSS-12 (2005) Albuquerque

A small polaron hopping model for the multiphonon-assisted transport along DNA molecules, in the presence of disorder


SOUND PROPERTIES: An encyclopaedic narration, (2002-2004) Magdeburg

part1

part2

part3

part4